Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs831749 chr1:201141783 G/A 4.2E-6 492 30.5 31.22 37.9 KM Plot
PRAD rs831753 chr1:201156184 C/T 0.000136 494 29.15 35.98 38.2 KM Plot
PRAD rs831754 chr1:201156128 T/C 2.84E-6 492 29.32 34.23 37.9 KM Plot
PRAD rs831758 chr1:201154862 G/A 3.6E-6 490 30.5 31.22 37.9 KM Plot
PRAD rs831759 chr1:201154311 C/T 2.12E-5 492 30.5 31.13 42.43 KM Plot
PRAD rs831760 chr1:201154230 C/G 2.12E-5 493 30.5 31.03 42.43 KM Plot
PRAD rs831762 chr1:201153168 G/T 2.01E-5 494 30.75 30.93 42.43 KM Plot
PRAD rs831763 chr1:201150999 G/A 1.99E-5 493 30.73 31.13 42.43 KM Plot
PRAD rs831764 chr1:201150139 C/T 2.34E-5 493 30.27 31.13 42.43 KM Plot
PRAD rs831765 chr1:201149969 A/C 1.99E-5 494 30.5 31.13 42.43 KM Plot
PRAD rs831767 chr1:201149319 A/G 1.99E-5 494 30.5 31.13 42.43 KM Plot
PRAD rs831768 chr1:201149033 C/T 2.48E-5 492 30.23 31.13 42.43 KM Plot
PRAD rs831771 chr1:201146810 G/T 8.92E-6 494 30.5 30.93 43.53 KM Plot
PRAD rs831773 chr1:201145650 G/A 1.99E-5 494 30.5 31.13 42.43 KM Plot
PRAD rs8662 chr2:241517770 G/A 1.73E-9 490 25.37 31.93 30.2 KM Plot